Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VKFDLENGYVVKADGEMLVGGKFVVFKDSMKNWEPPY----ENKKLSESEVQEIIQQVKQSTNENTVQISFE
2LTD Chain:A ((40-75))
----------------------------DIRTWSPDHEKMGKGITLSEEEFGVLLKELGNKLEH--------
General information:
TITO was launched using:
RESULT:
Template:
2LTD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 3653 for 121 contacts (30.2/contact) +
2D Compatibility (PS) -3460 + (NN) -965 + (LL) 2508
1D Compatibility (HY) -2400 + (ID) 300
Total energy: -964.0 ( -7.97 by residue)
QMean score : 0.525
(partial model without unconserved sides chains):
PDB file :
Tito_2LTD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LTD-query.scw
PDB file :
Tito_Scwrl_2LTD.pdb
: