Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LNIMIALIPALLWGTVPLIITKFGGSTRQQTMGMTLGALTFAVIVFFFTDPVYTLKTVGISFITGCLWTVGQMFQLQAFKIIGVSKAMPISTGMQLVGTTLCGVILFHEWDTTLRIILGFIALALIVGGIFLTSYAEKEEDGTNALKQGLITLFISACGYVGLVVLIQGFKIDGINAILPQAIGMVISALIMTHSGGTEKRFNKRTLLLTIPGVIWAAGNVAMVHANQLVGVATGFSLSQLGVVISTIGGIILLKEKKTQKEMLFVIVGVVLVVLGGILIGVAKGA |
| 2JO1 Chain:A ((23-36)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IAGILFILGILIVL----- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2JO1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -5259 for 49 contacts (-107.3/contact) +
2D Compatibility (PS) -1219 + (NN) 492 + (LL) 22928
1D Compatibility (HY) -3200 + (ID) 150
Total energy: 13592.0 ( 277.39 by residue)
QMean score : 0.449
|
|
|