Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKKTSLACSECGSRNYTVNVSGTQKETRLEV----KKFCRHCNKHTLHRETK
1YSH Chain:D ((27-49))
---------------------------KKMEVSQHSKYFCEFCGKFAVKR---
General information:
TITO was launched using:
RESULT:
Template:
1YSH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -861 for 62 contacts (-13.9/contact) +
2D Compatibility (PS) -2025 + (NN) 420 + (LL) 1560
1D Compatibility (HY) -2400 + (ID) 400
Total energy: -3706.0 ( -59.77 by residue)
QMean score : 0.276
(partial model without unconserved sides chains):
PDB file :
Tito_1YSH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YSH-query.scw
PDB file :
Tito_Scwrl_1YSH.pdb
: