Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----------------------------------------------------------MSAIAKFFRNVSSEMHKVTWPTRKELLTYTVTVVITVVLFALFFMLIDFG----------IEQIIKLIV----------
1TM9 Chain:A ((1-137))
MEQNNIKEQLISFFNQACSTHQERLDFICSTRESDTFSSVDVPLEPIKNIIEITKDENQQIEITKIAVNNIKTLSSV-GATGQYMASFFSTNSEPAIIFCVIYFLYHFGFLKDNNKKQIIKKAYETIADNIADYLNEN
General information:
TITO was launched using:
RESULT:
Template:
1TM9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53105 for 334 contacts (-159.0/contact) +
2D Compatibility (PS) -6011 + (NN) -3560 + (LL) 52
1D Compatibility (HY) -2400 + (ID) 600
Total energy: -65624.0 ( -196.48 by residue)
QMean score : 0.714
(partial model without unconserved sides chains):
PDB file :
Tito_1TM9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TM9-query.scw
PDB file :
Tito_Scwrl_1TM9.pdb
: