Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LRKLDFSYNNANYNAEFLMKILTTLKDITKVEQFTIEIIDAVPNDQEQFKEEKGLFSKEVFDFNNLVKESHGIKIDFKEITN--------ILKQCRTVWELSMLVVTSE-NELNDSGKVLCEVELIEGDLF----AILYSEDFNID-------------------LFLEKFSTDEITIEG
3DS8 Chain:A ((134-250))
--------------------------------------------------------------FNDLDPNDNGMDLSFKKLPNSTPQMDYFIKNQTEVSPDLEVLAIAGELSEDNPTDGIVPTISSLATRLFMPGSAKAYIEDIQVGEDAVHQTLHETPKSIEKTYWFLEKFKTDETVIQ-
General information:
TITO was launched using:
RESULT:
Template:
3DS8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17946 for 526 contacts (-34.1/contact) +
2D Compatibility (PS) -8452 + (NN) 2278 + (LL) 4792
1D Compatibility (HY) -5200 + (ID) 1450
Total energy: -25978.0 ( -49.39 by residue)
QMean score : 0.212
(partial model without unconserved sides chains):
PDB file :
Tito_3DS8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DS8-query.scw
PDB file :
Tito_Scwrl_3DS8.pdb
: