Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKTWEEFLKQEAKQPYFIELMEAVKDARAKGNVYPSEEDMFSCFRLCPYNQVKVVILGQDPYHGPGQAHGLSFSVQKDVRIPPSLRNIYKELKTDLD--IEPADHGYLAKWAEQGVLLMNTSWSVEEGKAGSHKKLGWATFTDHVLEELNNYDKPLVFILWGNHAIKAASGITNPQHLIIKGVHPSPLAASRGFFGSKPFSKTNAFLEEHERKPIDWDLNEQ
4UQM Chain:A ((27-240))
----WQEALLPEFSAPYFHELTDFLRQERKEYTIYPPAPDVFNALRYTPLGEVKVLILGQDPYHGPNQAHGLSFSVRPGVRVPPSLRNIYKELTEDIPGFVAP-KHGYLRSWAEQGVLLLNAVLTVRAAQANSHQGKGWEHFTDAVIKAVNAKEERVVFILWGSYARKKKKLITGKNHVVIESGHPSPL-SEQYFFGTRPFSKTNEALEKAGRGPVEWQL---
General information:
TITO was launched using:
RESULT:
Template:
4UQM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97720 for 1757 contacts (-55.6/contact) +
2D Compatibility (PS) -22884 + (NN) -9245 + (LL) 948
1D Compatibility (HY) -20800 + (ID) 5450
Total energy: -155151.0 ( -88.30 by residue)
QMean score : 0.700
(partial model without unconserved sides chains):
PDB file :
Tito_4UQM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4UQM-query.scw
PDB file :
Tito_Scwrl_4UQM.pdb
: