Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAGKMKLFSVTSERPLATKIADYLDIPLCEVELQKFSDGEVKINIEESIRGTNAYVVQSMNSNVNERLMELLIMVDALKRASVHSINIIMPYYGYARQDRKARSREPITAKLMANLIQRAGANRLITVDLHAAQIQGFFNIPIDHLSAIPLIGDYLIENYGEKDV-VVVAPDHSGVVRARRIADRLNAPIAILNRK---PRPHEDEIMSVIGDVKGKVAIVVDDIIDTGVRATTSADILLEKGAVEVIACATHSVMA-GNATERLQNSNIKEVITSDSIDLPEDKQFDKLTTISIGRILGRAIEGVQENRSLHPLF |
| 3LPN Chain:A ((1-265)) | ----MKIIALRSSLKLAARIAEELKTEPVMPDERRFPDGELYLRYDEDLTGHNIFIIG--NTHSDAEVMEMILTLSAIQDYRTKSVNIIAPYYGYARQHQRYKNGEPISSQILTE-IYSSYSNSIATVDIHDEKTLSYSKVKFSDLHA----NDAIVRYYKNVDVDYVVSPDDGGLARVADISAKLGKKHFFIEKKRIDDRTVEMKVPNV--DVNGKKLLIVDDIISTGGTIAKSSGLLREKGASKIYVSAVHGLFVNGSENKILQNAD--EIHVTDTVE------------------------------------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3LPN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -156038 for 2133 contacts (-73.2/contact) +
2D Compatibility (PS) -27938 + (NN) -8258 + (LL) 3684
1D Compatibility (HY) -18800 + (ID) 4150
Total energy: -211500.0 ( -99.16 by residue)
QMean score : 0.547
|
|
|