Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKAKYEENFKKSLVALYRRGKTKHSICQEFNVPHSTFGKWIKKFNNEENIESNEILNILQAQELKKQRVLLEEELSILTEAIAVFENPLPKNK
1PDN Chain:C ((15-62))
--GRPLPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQE-TGS-------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1PDN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20327 for 282 contacts (-72.1/contact) +
2D Compatibility (PS) -4944 + (NN) -1236 + (LL) 4572
1D Compatibility (HY) -3600 + (ID) 350
Total energy: -25885.0 ( -91.79 by residue)
QMean score : 0.747
(partial model without unconserved sides chains):
PDB file :
Tito_1PDN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PDN-query.scw
PDB file :
Tito_Scwrl_1PDN.pdb
: