Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPVGIIIGTHGE-AARELLKSTEMIIGKQDNVEFITFVPGENTDTLITKYKEKLDKLDTSEGVIFMVDLFGGSPYNASSQIALP-EDNMDVVTGVNIPMLLETLSMRAA-SNQKDLVETALTAGSGGVKSLKQSLPKIETEVGEDDL
3GX1 Chain:A ((4-126))
-QVEVIVMMHGRSTATSMVETVQELLSIE-SGIALDMPLTVEVKAMYEKLKQTVVKLNPVKGVLILSDM--GSLTSFGNILTEELGIRTKTVTMVSTPVVLEAMRKASLGRGLEDIYQSCEQLFENK--------------------
General information:
TITO was launched using:
RESULT:
Template:
3GX1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59361 for 948 contacts (-62.6/contact) +
2D Compatibility (PS) -13956 + (NN) -11729 + (LL) 1364
1D Compatibility (HY) -6800 + (ID) 1050
Total energy: -91532.0 ( -96.55 by residue)
QMean score : 0.623
(partial model without unconserved sides chains):
PDB file :
Tito_3GX1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GX1-query.scw
PDB file :
Tito_Scwrl_3GX1.pdb
: