Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VSKNVKKIVITLFALIMTVGLASGFIAPIKASADTNNFTVKVEYVDADGAEIAPSDILTDYHYVSTPKDIPGYKLREIPHNATGNITDTGIIVRYIYDKTIDVRYVDETGKDLLPVVEIINSEAAVLETISDYTFVKKDISIDGLHIIFRYKKNISTIPDFGKPNQVTVNYLDEN--KTPIAPSLYLSGLFNEA--YNVPMKKIKGYTLLKYDSEILGVFTESPQTINIIYQKKAPEQAPSMEPLPDPTVPESPQVEKSKIKKSKIETTEKRTTSKVKIAPKALKLTKVEQKKQETKDSLPKTGDSSVNLLITCLGIIAISCGVYLLVQQSQKRRRKE |
| 2KYW Chain:A ((4-67)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------DATITYVDDDKGGAQVGDIVTVTGKTDDSTTYTVTI--PDGYEYVGTDG---GVVSSDGKTVTITFAAD-------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2KYW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -27151 for 306 contacts (-88.7/contact) +
2D Compatibility (PS) -6493 + (NN) -807 + (LL) 18220
1D Compatibility (HY) -4000 + (ID) 650
Total energy: -20881.0 ( -68.24 by residue)
QMean score : 0.483
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