Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LEKEKVVNIQPLMDSQVESQFTQQIQEDFNKKNPDHSALLHSLETVEVLDVLSDYYTAHEKQKQPPKETTSPSKSNGEHKEIKQAIRYIKKNIHRSITLEEVANHVYLSPFYLSKLFKNELNINFINYVNEQKMLYAKEQLEKSDWAVHTIAKNLGFSRASYFCKVFKKEFKMTPKEYRDSLK
3OOU Chain:A ((4-108))
------------------------------------------------------------------------------SPIIQNVLSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQKEMGEHFTDYLNRYRVNYAKEELLQTKDNLTIIAGKSGYTDMAYFYRQFKKHTGETPNRYRKIHQ
General information:
TITO was launched using:
RESULT:
Template:
3OOU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38616 for 719 contacts (-53.7/contact) +
2D Compatibility (PS) -10952 + (NN) -3469 + (LL) 4740
1D Compatibility (HY) -8000 + (ID) 1500
Total energy: -57797.0 ( -80.39 by residue)
QMean score : 0.652
(partial model without unconserved sides chains):
PDB file :
Tito_3OOU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OOU-query.scw
PDB file :
Tito_Scwrl_3OOU.pdb
: