Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNYIKNPAK-IEEKSFEIIQQIIDDIRPDYTFQNKLEEAIIKRAIHTTADFDYLDSLVFQQDAIAKIIHVLQNKGTIFTDTNMALSGINKRLLDELGCKYHCYVSDPETMEIAKQHGITRSMAGIKLASLKD--GPKLFVLGNAPTAVYKIIEMVESGQLQADAVVAVPVGFVGAAECKEEILE------TDIPAIVARGRKGGSNLAAAIINAILITM
2AFV Chain:B ((4-215))
MRQITNLGRNIENKSF----SIIDEEAGPHSFAQE-EWEVVRRIIHATADFDYKNITKIHPQAIDSGIQALKKGCPIVCDVQMILSGLNPERLKVYGCKTYCFISDEDVIENAKRKNSTRAIESIQKANSFNLLNESIIVIGNAPTALLEIEKLIRQEGIKPALIVGVPVGFVSAKESKESILKLEYYNVTSIPYILTMGRKGGSTIAVAILHALLL--
General information:
TITO was launched using:
RESULT:
Template:
2AFV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -153328 for 1693 contacts (-90.6/contact) +
2D Compatibility (PS) -22465 + (NN) -7288 + (LL) 1068
1D Compatibility (HY) -16400 + (ID) 4150
Total energy: -202563.0 ( -119.65 by residue)
QMean score : 0.668
(partial model without unconserved sides chains):
PDB file :
Tito_2AFV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2AFV-query.scw
PDB file :
Tito_Scwrl_2AFV.pdb
: