Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRNKKIPLRKCIITGERLPKGELLRIAYSKDGALTIDPTGKAPGRGFYIVKSVEAC------EKAKKKNAIFHQLK--MPEQESFYDELIAYVKSLEEPTNG-
1RKI Chain:A ((1-101))
--MKKHIIIKTIPKKEEIISRDLCDCIYYYDNSVICKPIGPSKVYVSTSLENLEKCLQLHYFKKLVKNIEIFDEVHNSKPNCDKCLIVEIGGVYFVRRVNGVP
General information:
TITO was launched using:
RESULT:
Template:
1RKI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 14027 for 629 contacts (22.3/contact) +
2D Compatibility (PS) -9589 + (NN) 2183 + (LL) 308
1D Compatibility (HY) -4400 + (ID) 950
Total energy: 1579.0 ( 2.51 by residue)
QMean score : 0.043
(partial model without unconserved sides chains):
PDB file :
Tito_1RKI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RKI-query.scw
PDB file :
Tito_Scwrl_1RKI.pdb
: