Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKSNTFLLITILVGLVFISFGCSEEKETPKKTAKEVQGVQIKTKEFQRVVGWLSKDSVLLQTKKSG-----VTYFEELNIYNEKKRPIFNTKESISEVQISPDYRNILLYSAESAEKATMRIIALNDGSTVASRATK----------PLTTTFYWNDESPEKIMFVTYSPEWNFQIENWDYTLDQLDKID-V---ASPFISWYGDNLVISNNKDKPDDELGNLYLQDIRDSATKNLIV-------ANIMQFAVHDNVLLTIEKNSDEKLLYDFRTLGFQNFFSYNAAREYDELGTFVPYFDTNFDKNTFLTFVPYKSAKIGSGAKEYKLVKIDPTNKKESTILEL-MDNQPILSYETGDLVLYGYLFDKVIDTKTGKMYNLINTPTKSF |
| 3VGZ Chain:A ((41-333)) | ---------------------------------------------KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTV---NSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYI-SGI-G-KESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNAD-----GELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAP--------ESLAVLFNPARNEAYVTHRQ----------AGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVK----------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VGZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -14882 for 2197 contacts (-6.8/contact) +
2D Compatibility (PS) -28019 + (NN) -924 + (LL) 6096
1D Compatibility (HY) 7200 + (ID) 1000
Total energy: -31529.0 ( -14.35 by residue)
QMean score : 0.263
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