Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VQQINWKKNVSFRSGSPAFTLLETILSITIILSISLLIPLFFQCYNKTIQLSNIDQTTEWQLFLIQTRLELEKATNIQIDGNKLSFSNGKDLITYSKYNDLVRRQVNGKGHEPLLTNVKDYQLIKKEKQLHLTVQDSNTQIYTSVFALPEVVSNP |
1ZZA Chain:A ((1-90)) | ------------------------------------------------GSMSIMDHSPTTGVVTVIVILIAIAALGALILGCWCYLRLQR----ISQSEDEESIVGDGETKEPFLLVQYSAKGPCVERKAKLMTPNGPEVHG------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1ZZA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 26863 for 480 contacts (56.0/contact) +
2D Compatibility (PS) -9750 + (NN) -6413 + (LL) 5248
1D Compatibility (HY) 1600 + (ID) 700
Total energy: 16848.0 ( 35.10 by residue)
QMean score : 0.090
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