Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPNIKSAIKRVKTAETRNSRNASQRSAMRTAIKK-FDEAAANNADNAKDLYVEASKKLDSAVSKGLIHKNNAARNKSRLAAKLAK
4DR1 Chain:T ((11-88))
-----SALKRHRQSLKRRLRNKAKKSAIKTLSKKAIQLAQEGKAEEALKIMRKAESLIDKAAKGSTLHKNAAARRKSRLMRKV--
General information:
TITO was launched using:
RESULT:
Template:
4DR1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 12961 for 463 contacts (28.0/contact) +
2D Compatibility (PS) -8494 + (NN) -3418 + (LL) 464
1D Compatibility (HY) -1600 + (ID) 1450
Total energy: -1537.0 ( -3.32 by residue)
QMean score : 0.634
(partial model without unconserved sides chains):
PDB file :
Tito_4DR1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DR1-query.scw
PDB file :
Tito_Scwrl_4DR1.pdb
: