Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKNTKGKKITIIISIIILILVIATFSGYYYVKSQLEPKDEASKEKITVEIPAGSSISDISTILEDKKVI------NNASIFSFYVKYNNDTNLKAGNYELSPAMNTDQIVKKMQEGKTVAPAKLVIPEGYTLDQIADRIVAYQPKLKKADVLKTMDDPEFVASMIKAYPETVTNDVLNKSIKHPLEGYLYPATYTFKGTDVSAEQIITE--MVKATDVNIAKYRDELTKQKMSVHKFLTMSSIIEKEATENVDRKMIASVFYNRLAKDMRLQTDPTVLYALGE--HKSKTTYKDL--------EVDSPYNTYKN---NGLPPGPISNSGDSSMEAALYP---EKSDYLYFLANTKTGK--VYFSKTLEEHNKLKEEHITKNN----- |
| 4PEI Chain:A ((7-355)) | -------------QIQHIAIVGSVHGKYREMYRQLSEYEKSTGKEISFVICTG----DMQTLRYEADLVYLKVPPKYKQMGDFHLYYEGKEKAPYLTLFIGGNHESSNVLLHLYNGGFVCFNMYYLGVCSCININGLRIVGVSGIYKSFDEKKPYTYPPSPNDVVSLFH---TRNYVIQMLSNLSQS---------SQIDISLSHDWPQGIVMKGNYKQLYRFQPGFKKDGAS------LGSPINKVILNTLKPKYWISGHMH---CEYHAEEGPTHFIALGKIGYKNAISYLDLPLKQKTDLEYDKDWVCNLIMTWPAFSNKAQFPDLSYSISELLSKRTKELDKKIIELWEKYIGLKIIYDSDTFDIQFTSRRFYIEKIYNELNI |
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General information:
TITO was launched using:
| RESULT:
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Template: 4PEI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 24645 for 2659 contacts (9.3/contact) +
2D Compatibility (PS) -33206 + (NN) -3938 + (LL) 3372
1D Compatibility (HY) -14400 + (ID) 2650
Total energy: -26177.0 ( -9.84 by residue)
QMean score : 0.014
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