Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKTFQLVATAASGLEAIVGKEVARLGYDP-KVENGKVYFEGDLSAIARANLWLRVADRVKIVVGVFKATTFDELFEKTKALPWEDYLPLDAQFPVAGKS-VKSTLYSVPDCQAIVKKAIVNRVSEKYRRSGRLMETGALFKLEVSILKDEVTLTIDTSGAGLHKRGYRLAQGSAPIKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQIWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTSYELFEEVYGKKATKKRKLYNGYLRTDLYQYWGPRKPRPKKED |
| 3LDU Chain:A ((5-383)) | -KNYTLISPCFFGMEKMLAREITNLGYEIIKTEDGRITYKTDEFGIAKSNMWLRCAERVHLKIAEFEAKSFDELFENTKRINWSRYIPYGAQFPISKASSIKSKLYSTPDVQAIVKKAIVESLKKSYLEDGLLKEDKEKYPIFVFIHKDKVTISIDTTGDALHKRGYREK--KAPIRETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITSYEDFEYEFGQKADKKRKLYNGMLKTNFFQYPGPKPPRN---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LDU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -197135 for 3159 contacts (-62.4/contact) +
2D Compatibility (PS) -40719 + (NN) -21764 + (LL) 312
1D Compatibility (HY) -36400 + (ID) 9100
Total energy: -304806.0 ( -96.49 by residue)
QMean score : 0.542
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