Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VVKTRKEKREYEEPADYDMSSEGQDEFNNEPPMLSRSDSRRGKKKTIFRYPLLNLLIVFFLLIPIVIVIVFVTVQNMGSSNEVKTETESTVNVSDNTQ-SKEEKEKAKKAAEEKAAA-EKAAEEKKAAAEKAEADKKKQEEDAVKAANAKKEQEAAEEKAAADKAAAEKAAAEKAEQQKANEASQQKAGGSHTVKAGDTLYSIARSTYGQAGAAAGVEKIKQANGLGSDNVPVGTVLTIPQ |
3CVE Chain:A ((285-352)) | ----------------------------------------------------------------------------------------------HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAKLLE------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3CVE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 16405 for 233 contacts (70.4/contact) +
2D Compatibility (PS) -7894 + (NN) -10668 + (LL) 11540
1D Compatibility (HY) 400 + (ID) 300
Total energy: 9483.0 ( 40.70 by residue)
QMean score : 1.207
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