Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | LPNEVYDVTIIGGGPIGLFSAFYSGLRSMKTKIIDAEPAVGGKVRYFFPEKIIRDIGGIPAITGENLVANLKQQAETFHPTIVCSERVVDVTKLA--DGTFQLTSHNGSIHFSKTIVIATGSGTFEVNKLEALHAEDFPFAIHYDVKNIEQ--------FRDKVVVVSGGGNSAIDWAQTLEPIAKKVHLIYRGEDFKAHE---ESVRELKNSRVEIHIHHEISELIGTNNQLTEITVCCNQTQTTKTIETEALFINHGVKVDLGTMAEWGFKQADFG-IVVDDEMKTTVPGIFACGDSATYPRKIRIIAAGLHEGPIAINSAKKYLEPTAADEAMISTHHESFIG |
4YKF Chain:A ((211-515)) | ---DAYDVLIVGSGPAGAAAAIYSARKGIRTGLMGER--FGGQI---LDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRNMN---------VPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKLRSLKN--VDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWL-EGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYKQIIIATG--EGAKASLSAFDYL------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4YKF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -185176 for 2494 contacts (-74.2/contact) +
2D Compatibility (PS) -31306 + (NN) -9082 + (LL) 2840
1D Compatibility (HY) -14400 + (ID) 4300
Total energy: -241424.0 ( -96.80 by residue)
QMean score : 0.510
|
|
|