Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VKIKSFLGKSLTLVVLGVFLFSGWKIGMELYENKHNQTILDDAKAVYTKDAATTNVNGEVRDELRDLQKLNKDMVGWLTIIDTEIDYPILQSKDNDYYLHHNYKNEKARAGSIFKDYRNTNEFLDKNTIIYGHNMKDGSMFADLRKYLDKDFLVAHPTFSYESGLTNYEVEIFAVYETTTDFYYIETEFPETTDFEDYLQKVKQQSVYTSNVKVSGKDRIITLSTCDTEKDYEKGRMVIQGKLVTK
4LFD Chain:D ((29-213))
-----------------------------------------------------------VRPQFESLEKINKDIVGWIKLSGTSLNYPVLQGKTNHDYLNLDFEREHRRKGSIFMDFRNELKNLNHNTILYGHHVGDNTMFDVLEDYLKQSFYEKHKIIEFDNKYGKYQLQVFSAYKTTTKDNYIRTDFENDQDYQQFLDETKRKSVINSDVNVTVKDRIMTLSTCEDAYSETTKRIVVVAKII--
General information:
TITO was launched using:
RESULT:
Template:
4LFD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64993 for 1421 contacts (-45.7/contact) +
2D Compatibility (PS) -19786 + (NN) -6600 + (LL) 4324
1D Compatibility (HY) -19600 + (ID) 3650
Total energy: -110305.0 ( -77.62 by residue)
QMean score : 0.478
(partial model without unconserved sides chains):
PDB file :
Tito_4LFD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LFD-query.scw
PDB file :
Tito_Scwrl_4LFD.pdb
: