Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTKKVGLLVMAYGTPYKDEDIERYYTDIRHGHKPSEEMIADLRGRYHAIGGLSPLAKITEAQAYGLEKALND-SQDEVEFKAYIGLKHIEPFIEDAVEAMHKDGIEEAISIVLAPHYSSFSVEA--------YNKRAKEAADKLGGPRINAINDWYKQPKFIQMWADRINETAKQIPADELLDTVLIVSAHSLPEKIKQHNDPYPNQLQETADFIFEKV-VVPHYALGWQSEGKTGE-PWLGPDVQDLTRELYGREKYKHFIYTPVGFVAEHLEVLYDNDYE-CKVVTDEVGA-AYHRPPMPNSDPEFLEVLRTVVWEKYSN |
| 4MK4 Chain:A ((58-321)) | --------------------------------------------QYRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCCTTGSSLNAIYRYYNQVGRKPTMKW-----STIDRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEYCNPYRLVWQS--KVGPMPWLGPQTDESIKGLCERGR-KNILLVPIAFTSDHIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLV------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4MK4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -77361 for 1885 contacts (-41.0/contact) +
2D Compatibility (PS) -26588 + (NN) -10643 + (LL) 2872
1D Compatibility (HY) -18000 + (ID) 4250
Total energy: -133970.0 ( -71.07 by residue)
QMean score : 0.502
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