Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTANQMERKKVTIHITNVIRQMDAEEKSDMSVSGVFYRDKG---NRYLHYEEKQLA----GTIRTVLKIADNELLLMRSGA-----VNMRMHFFRD------NRRSTASVD---SGAGKLQLESELVSMEELYENKPDVLSEVAFQYDLLSHGEYIGSYTVLMKIEEDAE
1AKB Chain:A ((140-273))
------------------------------------FRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAHNMGLYGERAGAFTVICRDAEEAK
General information:
TITO was launched using:
RESULT:
Template:
1AKB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15582 for 631 contacts (-24.7/contact) +
2D Compatibility (PS) -11771 + (NN) -1723 + (LL) 3208
1D Compatibility (HY) -5600 + (ID) 1350
Total energy: -32818.0 ( -52.01 by residue)
QMean score : 0.161
(partial model without unconserved sides chains):
PDB file :
Tito_1AKB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AKB-query.scw
PDB file :
Tito_Scwrl_1AKB.pdb
: