Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLHELKPSEGSRKERNRVGRGTGSGNGKTSGRGHKGQKARSGGGVRLGFEGGQLPLFRRIPKRGFTNINRKEFAIVNLDVLNRFEDGTEVTPELLVETGIIRNEKSGIKILSNGNIEKKLTVKANKFSAAAKEAIEAAGGKTEVI
3CF5 Chain:I ((4-139))
---HDLKPTPGSRKDRKRVGRGPG-GTDKTAGRGHKGQKSRSGAGKGAFFEGGRSRLIARLPKRGFNNVG-TTYEVVKLSQLQDLED-TTFDRDTLEAYRLVRRKNRPVKLLASGEISRAVTVHVDAASAAAIKAVEAAGGR----
General information:
TITO was launched using:
RESULT:
Template:
3CF5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1237 for 685 contacts (-1.8/contact) +
2D Compatibility (PS) -14133 + (NN) -3473 + (LL) 900
1D Compatibility (HY) -7200 + (ID) 3300
Total energy: -28443.0 ( -41.52 by residue)
QMean score : 0.365
(partial model without unconserved sides chains):
PDB file :
Tito_3CF5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CF5-query.scw
PDB file :
Tito_Scwrl_3CF5.pdb
: