Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPRKGPVAKRDVLPDPIYNSKLVTRLINKMMVDGKRGKSQAILYSAFDIIAQETGKDPMEVFEQAMKNIMPLLEVKARRVGGANYQVPIEVRADRRSTLGLRWLVNYARLRGEKTMEVRVAREIMDAANNTGASVKKREDTHKMADANRAFAHYRW
1XNQ Chain:G ((2-156))
-ARRRRAEVRQLQPDLVYGDVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEPLKVFKQAVENVKPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAANQRPERRAAVRIAHELMDAAEGKGGAVKKKEDVERMAEANRAYAHYRW
General information:
TITO was launched using:
RESULT:
Template:
1XNQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34814 for 1125 contacts (-30.9/contact) +
2D Compatibility (PS) -16929 + (NN) -8936 + (LL) 208
1D Compatibility (HY) -13200 + (ID) 3950
Total energy: -77621.0 ( -69.00 by residue)
QMean score : 0.549
(partial model without unconserved sides chains):
PDB file :
Tito_1XNQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XNQ-query.scw
PDB file :
Tito_Scwrl_1XNQ.pdb
: