Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -MNGFIAFMEKYF--IPYAAKIGGQRHLVAIRDGFITTMPLMILGSFAVLINNFPIPAYQKFMNNLFGEGTWQAFGGNVWNGTFAILALLIAFTVAYNLAKSYDKDPLSSAVVSVATFFTIGAIAPGADGIANTGGLGSTGLFLALIIAILSTEIFTRLSGSPKLIINMPDGVPPAVSRSFAALFPAMITVSIFG-LITAFFQAAGVTNLVISFYELVQEPFMGLANSLPAALLLAFVS-AFLWFFGLHGANIIDPFMQTINIPAIEANVKALEAGKELPYIVNKPFFDSFVNLGGTGATIGLIIAIFIVARKHKAYMTVSKLSAAPGIFNINEPMMFGLPIVLNPIMFIPYILAPLVLVTVA-YFATAIGWVPACTIVTPWTTPPIIGGALATQSIA-GGVLAAVNLGLSILIFLPFAK-IAQIQELRREKEALAAEGVTAE |
| 5AFR Chain:A ((8-410)) | LANELIEFVAATVTGIKNSPKENEQAFIDYLHCQYLERFQFFLGLFVFLFIVTIDIAIYDANLAN--------------------------------------------------STLLIIKQISAI-----------YNAGNLASIITHGVSSVFGQLIKSD---IDKTRRKLDDISKQFQQLHTSIETPDLLAMVPS-----------IIKLAVSKGATSHDYANYLPSNDL---ESMRFLNILQSIANKWFLVLKQTLFLDEVEFWSNFYEVLKSLIEQTQSQEFQVCLSVLTNAKRFHNLTNLLNEGSLSDKFKLADKYNQFLSSIPIDEDLQELFPVLASSLKKFRYSGYPVQRFVVLMD---------------------------KISQEVMDAILSNLSYGSFLGLYEKSAGMIEEWDDIVQDVNLLIR------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 5AFR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -162674 for 1912 contacts (-85.1/contact) +
2D Compatibility (PS) -33974 + (NN) -8379 + (LL) 7276
1D Compatibility (HY) -14400 + (ID) 2650
Total energy: -214801.0 ( -112.34 by residue)
QMean score : 0.017
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