Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKLNEALKKAERIVFLTGAGVSVPSGIPDYRSKNGLYAGMSSPEYMLSHTCLVREPEKFYQFVTENMYYP-NAVPNVIHKKMAEIETEKDVT-IITQNIDGLHEKAGSKKVVNFHGSLYHCYCQNC--GMTVTAKDYLKSDIHTD-CGGVIRPDVVLYEEAISESAIDQSLTAIRKADLIVIVGTSFRVSPFCNLT-DYRNKKARIFAVNKERISL-PYPFEMMESDAVKVFEEI
4TWI Chain:A ((4-236))
--KLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLW-NRYRPEELANPQAFAKDPEKVWKWYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLRVVRCTSCNNSFEVESAPKIPPLPKCDKCGSLLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDEL
General information:
TITO was launched using:
RESULT:
Template:
4TWI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -131807 for 1862 contacts (-70.8/contact) +
2D Compatibility (PS) -24232 + (NN) -8960 + (LL) 272
1D Compatibility (HY) -14800 + (ID) 3800
Total energy: -183327.0 ( -98.46 by residue)
QMean score : 0.585
(partial model without unconserved sides chains):
PDB file :
Tito_4TWI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4TWI-query.scw
PDB file :
Tito_Scwrl_4TWI.pdb
: