Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNKRVAFILGGSGGIGKAVVQKLVEQNFAVAVHYAGNKAKAETLVENIVKSGGEAISVGGDVADEAQMIRAFDFIESQFGGIDVVINTAGIMKLSPIATLDMDDFDLIQRT---NVRGTFVVSKQAALRVR-----NGGAIINFSTSVTRTSFP-TYGAYVASKAGVESLTLILARELRGKDITVNAVAPGPTATPLFLTGKDDKTIDNLAKATPLERLGQPEDIAETVAFLAG-PARWVNGQVIFTNGGLA
4IQG Chain:C ((25-270))
---SKVVLITGGSRGIGAASALLAARQGYAVAVNYASNSAAADEVVRQIREAGGQALAVQADVAKEREVLAMFETVDAQLGRLSALVNNAGVVDQTT--RVDGITLERLQRMFEINVFGSFLCAREAVKRMSTRYGGSGGSIVNVSSAAARLGSPGQYVDYAAAKGAIDTFTLGLAKEVATEGIRVNAVRPGIIETDIHASGGLPNRARDVAPQVPMQRAGTAREVAEAIVWLLGDQASYTTGALLDVTGG--
General information:
TITO was launched using:
RESULT:
Template:
4IQG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117703 for 2069 contacts (-56.9/contact) +
2D Compatibility (PS) -26046 + (NN) -13823 + (LL) 848
1D Compatibility (HY) -13200 + (ID) 4050
Total energy: -173974.0 ( -84.09 by residue)
QMean score : 0.536
(partial model without unconserved sides chains):
PDB file :
Tito_4IQG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4IQG-query.scw
PDB file :
Tito_Scwrl_4IQG.pdb
: