Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKKTFSAYNFLTALILCLLTVLFIFPFYWIMTGAFKSQPDTIIIPPQWWPKAPTLENFKALTVQNPALRWLWNSVFISIMTMFLVCCTSSMAGYVLAKKRFYGQKILFSLFIAAMALPKQVVLVPLVRIINFMGIHD---------TLWAVILPLVG--WPFGVFLMKQFSENIPTELLESAKIDGCGEIRTFINVAFPIVKPGFAALAIFTFINTWNDYFMQLVMLTSRNNLTISLGVATMQAEMATNYGLIMAGAALAAVPIVTVFLVFQKSFTQGITMGAVKG
2ONK Chain:C ((28-275))
--------FSALLALLSSIILLFVLLPVAATVTLQLF-----------------NFDEFLKAASDPAVWKVVLTTYYAALISTLIAVIFGTPLAYILARKSFPGKSVVEGIVDLPVVIPHTVAGIALLVVFGSSGLIGSFSPLKFVDALPGIVVAMLFVSVPIYINQAKEGFASVDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFGAVVVIAY--YPMIAPTLIYERYL--SEGLSAAMPVAAILILLSLAVFVAL-RIIVG---------
General information:
TITO was launched using:
RESULT:
Template:
2ONK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -195115 for 1712 contacts (-114.0/contact) +
2D Compatibility (PS) -24532 + (NN) -8353 + (LL) 2172
1D Compatibility (HY) -17200 + (ID) 1750
Total energy: -244778.0 ( -142.98 by residue)
QMean score : 0.327
(partial model without unconserved sides chains):
PDB file :
Tito_2ONK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ONK-query.scw
PDB file :
Tito_Scwrl_2ONK.pdb
: