Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFVKKGDKVRVIAGKDKGTEAVVLKALPKVNKVVVEGVALIKKHQKP-NNENPQGAIVEKEAPIHVSNVQVLD-KNGVAGRVGYKVVDGKKVRYNKKSGEVLD
2J28 Chain:U ((4-102))
--IRRDDEVIVLTGKDKGKRGKVKNVLSS-GKVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSETI-
General information:
TITO was launched using:
RESULT:
Template:
2J28.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 13372 for 562 contacts (23.8/contact) +
2D Compatibility (PS) -10514 + (NN) -210 + (LL) 456
1D Compatibility (HY) -8000 + (ID) 2400
Total energy: -7296.0 ( -12.98 by residue)
QMean score : 0.249
(partial model without unconserved sides chains):
PDB file :
Tito_2J28.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2J28-query.scw
PDB file :
Tito_Scwrl_2J28.pdb
: