Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLHELKPAEGSRKVRNRVGRGTSSGNGKTSGRGQKGQKARSGGGVRLGFEGGQTPLFRRMPKRGFSNINAKEYALVNLDQLNVFEDGTEVTPVVLKEAGIVRAEKSGVKILGNGELTKKLSVKAAKFSKSAEAAITAKGGSIEVI
3CF5 Chain:I ((4-140))
---HDLKPTPGSRKDRKRVGRG-PGGTDKTAGRGHKGQKSRSGAGKGAFFEGGRSRLIARLPKRGFNNVGT-TYEVVKLSQLQDLED-TTFDRDTLEAYRLVRRKNRPVKLLASGEISRAVTVHVDAASAAAIKAVEAAGGRVVLP
General information:
TITO was launched using:
RESULT:
Template:
3CF5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 4266 for 700 contacts (6.1/contact) +
2D Compatibility (PS) -14025 + (NN) -1056 + (LL) 392
1D Compatibility (HY) -7600 + (ID) 3150
Total energy: -21173.0 ( -30.25 by residue)
QMean score : 0.274
(partial model without unconserved sides chains):
PDB file :
Tito_3CF5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CF5-query.scw
PDB file :
Tito_Scwrl_3CF5.pdb
: