Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLLIMGLPGAGKGTQAAKIVEEFGVAHISTGDMFRAAMANQTEMGRLAKSYIDKGELVPDEVTNGIVKERLAEDDIAEKGFLLDGYPRTIEQAHALDATLEELGLRLDGVINIKVDPSCLIERLSGRIINRKTGETFHKVFNPP-----VDYKEEDYYQREDDKPETVKRRLDVNIAQGEPILEHYRKLGLVTDIEGNQEITEVFADVEKALLELK
4MKH Chain:A ((3-216))
MNIVLMGLPGAGKGTLAEKIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVRERLSKSD-CERGFLLDGFPRTVAQAEALEEILEEMGRPIDYVINIQVRKEELMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQMAPLLAFYDSKEVLVNVNGERDIEDVFADVDVILLEHH
General information:
TITO was launched using:
RESULT:
Template:
4MKH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66802 for 1615 contacts (-41.4/contact) +
2D Compatibility (PS) -22640 + (NN) -9609 + (LL) 204
1D Compatibility (HY) -22400 + (ID) 6050
Total energy: -127297.0 ( -78.82 by residue)
QMean score : 0.549
(partial model without unconserved sides chains):
PDB file :
Tito_4MKH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MKH-query.scw
PDB file :
Tito_Scwrl_4MKH.pdb
: