Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRKRFSLLNFIVVTFIFFFFILFPLLNHKGKVDANSRQSVTYTKEEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILANKYHNLFGLLAEPGTPSITLNDSSTGKKQEKQFTHYKSWKYSMYDYLAHIKSGA----TGKKDSYTIMVSVKNPKTLVQKLQDSGFDNDK-KYAKKMTEIIDLYDLTRYDK |
2A1U Chain:A ((275-330)) | ----------------------------------------------------------------------------------------------------------------------------------YIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEILKKK------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2A1U.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 130 for 312 contacts (0.4/contact) +
2D Compatibility (PS) -5564 + (NN) -3897 + (LL) 9148
1D Compatibility (HY) -2400 + (ID) 1050
Total energy: -3633.0 ( -11.64 by residue)
QMean score : 0.313
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