Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVFNKLFKRRHSVSEEIKKDDLQEEVEATETEETVEEVIEEIPEKSELELANERADEFENKYLRAHAEMQNIQRRSSEERQQLQRYRSQDLAKAILPSLDNLERALAVEGLTDDVKKGLEMTRDSLIQALKEEGVEEVEVDSFDHNFHMAVQTLPADDEHPADSIAEVFQKGYKLHERLLRPAMVVVYN
2DY1 Chain:A ((174-240))
--------------------------------------------------------DVFHGKAYRYENGEEREAEVPPEERERVQRFR-QEVLEAIVET---------DEGLLEKYLEGEEVTGEALEKAFHEAVRRGLLYPVALASGEREIGVLPLLELILEALPSPTERFGDGPPLAKVFKVQVDPFM
General information:
TITO was launched using:
RESULT:
Template:
2DY1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10111 for 347 contacts (-29.1/contact) +
2D Compatibility (PS) -7106 + (NN) -1138 + (LL) 6228
1D Compatibility (HY) -2400 + (ID) 1100
Total energy: -15627.0 ( -45.03 by residue)
QMean score : 0.468
(partial model without unconserved sides chains):
PDB file :
Tito_2DY1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DY1-query.scw
PDB file :
Tito_Scwrl_2DY1.pdb
: