Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKNMMKYISELTTLIALAGLMVIITLINPNFLTTNNLLNLLLQVTANGFIAFGMTFVILTGGIDLSVGSILALSSALTAGLIGHGVPVGIAIVLSVALGGILGMLNGLFISYGKLAPFIVTLATMTIFRGATLVYSNGNPITAGLSDSFLFQFLGQGYIVG---IPFPVILMFLTFIILYILLHKTAFGK---SVYALGGNEKAAYISGIKLNKVKIIIYTISGIMASISGLIITSRLSSAQPTAGASYEM---------DAIAAVVLGGTSLSGGKGRIIGTLI-------------GALIIGVLNNGLNIIGVSAFW----------QQVVKGIVILMAVLLDRFKVAK |
| 4YLR Chain:A ((9-453)) | TITANVAGTKFEIVRLVIDEMGFMKTPDEDETSNLIWCDSAVQQEKISELQNYQRINHFPGMGEICRKDFLARNMTKMIKSRPLDYTFVPRTWIFPA-------------EYTQFQNYVKELKKKR--KQKTFIVKPISLIRNSQDHLIVQEYIEKPFLMEGYKFDLRIYILVTSCDPLKIFLYHDGLVRMGTEKYIPGSKRSIKWFTEFLQANQ----HDVAKFWSDISELVVKT-LIVAEPHVLHAYRMCRPGQPPGSESVCFEVLGFDILLDRKLKPWLLQINRAPSFGTDQKIDYDVKRGVLLNALKLLNIRTMGNYRRIYPPEDKALLEKYENLLAVAFQTFLSGR |
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General information:
TITO was launched using:
| RESULT:
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Template: 4YLR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -245116 for 2167 contacts (-113.1/contact) +
2D Compatibility (PS) -29700 + (NN) 2412 + (LL) 1796
1D Compatibility (HY) -12800 + (ID) 1900
Total energy: -285308.0 ( -131.66 by residue)
QMean score : 0.118
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