Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------MIPFTIEYIFVLIGAFLLSIILTPIIRVISLKVGAVDKPNARRI-NKVPMPSSGGLAIFLSFVVTTLFFMPMAASRHFI-----EVSYFHYILPVIIGGLVVTTTGFIDDIFELRP---RYKMLGIIIAAVIIWKFTHFRFDSFKIPIGGPLL------EFGPI-LTFFLT-----VLWIISITNAINLIDGLDGLVSGVSIISLATMAVVSYFFLPKIDFFLTLTIVILIASIVG--FFPYNYHPAIIYLGDAGALFIGFMI---GVLSLQGLKNSTAVAVITPVIILGVPILDTAVAIVRRKLSGKKISEADKMHLHHRLLSMGFTHRGAVLVVYGIAIIFSLIALLLNVSSRIGGIFLLLALLLAMEIFIEGLNIWGENRTPLFNLLKF-IGNSDYRQSVIAKYSDKHQK |
| 4QUV Chain:A ((23-427)) | FSWLVLMIALPPLVYYLWICVTYYQGELVFTS------------DAAAWRRFWSHVAPPTWHAAGLYAAWFLGQAALQVWAPGPTVQGMKLPDGSRLDYRMNGIFSFLFTLAVVFGLVTMGWLDATVLYDQLGPLLTVVNIFTFVFAGFLYFWGPFYDYFMGTALNPRIGSLDLKLFCEARPGMIFWLLMNLSMAAKQYELHGTVT------VPMLLVVGFQSFYLIDYFIHEEAVLTTWDIKHEKFGWMLCWGDLVWLPFTYTLQAQYLVHHTHDLPVWGIIAIVALNLAGYAIFRGANIQKHHFRRDPNRIVWGKPAKYIKTKQGSLLLTSGWWGIARHMNYFGDLMIALSWCLPAAFGSP---------IPYFHIVYFTILLLHREKRDDAMCLAKYGEDWLQYRKKVPWRIVPKIY- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4QUV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -297779 for 2584 contacts (-115.2/contact) +
2D Compatibility (PS) -35037 + (NN) 13728 + (LL) 2776
1D Compatibility (HY) -20800 + (ID) 3200
Total energy: -340312.0 ( -131.70 by residue)
QMean score : 0.109
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