Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTVLEQKLDHLVSQILLKAENQHELLFGTCQSDVKLTNTQEHILMLL---SQEQLTNSDLAKKLNISQAAVTKAVKSLISQDMLKANKDSKDARITYFELSELAKPIADEHTHHHDNTLGVYGRLVNHFSKDEKVVLERFLDLFSRELEG
4L9J Chain:A ((30-88))
-----------------------------------ITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAFTSIFDEMEQTLVSQLSEEENEQMKANLTKMLSSLQ----
General information:
TITO was launched using:
RESULT:
Template:
4L9J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30059 for 305 contacts (-98.6/contact) +
2D Compatibility (PS) -5833 + (NN) -2916 + (LL) 3748
1D Compatibility (HY) -3200 + (ID) 900
Total energy: -39160.0 ( -128.39 by residue)
QMean score : 0.703
(partial model without unconserved sides chains):
PDB file :
Tito_4L9J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4L9J-query.scw
PDB file :
Tito_Scwrl_4L9J.pdb
: