Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKLIKYILSFENIIAIFFIVLFGLLLIRIEPVNNSVYSIISGIAIDKVIIVIISSFVIAIFSAFFIIDILEIIFHLKIDSLFLIAYLFFAISLGFGLLKVLTESQFSLLSAFIAFPLFLIFPKLFEKIVNNRKINQKDNKNQK
2LAT Chain:A ((1-37))
----------------------------------------------------------------------------------------------------MITDVQLAIFANMLGVSLFLLVVLYHYVAVNNPKKQE-------
General information:
TITO was launched using:
RESULT:
Template:
2LAT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8741 for 147 contacts (-59.5/contact) +
2D Compatibility (PS) -3719 + (NN) -1463 + (LL) 11352
1D Compatibility (HY) -4800 + (ID) 450
Total energy: -7821.0 ( -53.20 by residue)
QMean score : 0.290
(partial model without unconserved sides chains):
PDB file :
Tito_2LAT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LAT-query.scw
PDB file :
Tito_Scwrl_2LAT.pdb
: