Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----MIDYIDLALTYGGFTSLDKVYLEKKLDGLSKQQRLDFITPPPSVINAYFAEIYQKQGPEAATDYYFDLSKALGLFPKHLSFDEEKPFIRLNLSGKSFGFAYLNDQEEASVFSEVKE-VITPQLLLE---IAQIFPQYKVYQDRSGIRMAKIDFDETESQNITPETSLLGNVLQLKKDIIKITSFNQEELLELVKTKSGKYYYSSQGRESVIYIDTKSTN
1Y88 Chain:A ((16-199))
NLYFQGHMVARLLEEHGFETKTNVIVQ----GNCVEQEIDVVAERDG--ERYMIECKFHNIPV-----YTGLKEAMYTYARFLDVEKHGFTQPWIFTNTKF-------SEEAKKYAGCVGIKLTGWSYPEKEGIEVLLESKGLYP----ITILRID-KEVLDELVRAGLVFCRDVVSAGEEKLREIGLSAKKAREVIAEAKKVIGGS----------------
General information:
TITO was launched using:
RESULT:
Template:
1Y88.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35719 for 1335 contacts (-26.8/contact) +
2D Compatibility (PS) -18400 + (NN) -3342 + (LL) 1924
1D Compatibility (HY) -8400 + (ID) 1450
Total energy: -65387.0 ( -48.98 by residue)
QMean score : 0.200
(partial model without unconserved sides chains):
PDB file :
Tito_1Y88.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y88-query.scw
PDB file :
Tito_Scwrl_1Y88.pdb
: