Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRKVRRHFTDDFKQQIVDLYNVGRKRSSLIKEYELTPSTFDKWVRQAKTTGSFKSVDNLTDEQRELIELRKHNKELEMQLDILKQAAVIMAQKGK
1K78 Chain:A ((30-77))
-----GRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLA
General information:
TITO was launched using:
RESULT:
Template:
1K78.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16644 for 285 contacts (-58.4/contact) +
2D Compatibility (PS) -4950 + (NN) 1040 + (LL) 536
1D Compatibility (HY) -3200 + (ID) 550
Total energy: -23768.0 ( -83.40 by residue)
QMean score : 0.713
(partial model without unconserved sides chains):
PDB file :
Tito_1K78.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1K78-query.scw
PDB file :
Tito_Scwrl_1K78.pdb
: