Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVALIPEKCIACG-----LCQTYSN--IFDYQDDGIVKFSDTDNLEKEVPNSDQDTVLAVKSCPTKALTIL
3GYX Chain:B ((2-63))
--TYVDPSKCDGCKGGEKTACMYICPNDLMILDPEEMKAFNQE-------PEACWECYSCIKICPQGAITAR
General information:
TITO was launched using:
RESULT:
Template:
3GYX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35620 for 366 contacts (-97.3/contact) +
2D Compatibility (PS) -5629 + (NN) -2299 + (LL) 756
1D Compatibility (HY) -2800 + (ID) 600
Total energy: -46192.0 ( -126.21 by residue)
QMean score : 0.535
(partial model without unconserved sides chains):
PDB file :
Tito_3GYX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GYX-query.scw
PDB file :
Tito_Scwrl_3GYX.pdb
: