Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKVEKLVKLQIPAGKATPAPPVGPALGQAGINIMGFTKEFNARTAD-QAGMIIPVVISVYEDKSFDFITKTPPAAVLLKKAAGVEKGSGEPNKTKVATVTRAQVQEIAETKMPDLNAANLESAMRMIEGTARSMGFTVTD
3DEG Chain:H ((1-141))
-AKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVYADRSFTFVTKTPPAAVLLKKAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTGADIEAMTRSIEGTARSMGLVVED
General information:
TITO was launched using:
RESULT:
Template:
3DEG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65288 for 958 contacts (-68.2/contact) +
2D Compatibility (PS) -15733 + (NN) -12074 + (LL) 208
1D Compatibility (HY) -12800 + (ID) 4500
Total energy: -110187.0 ( -115.02 by residue)
QMean score : 0.583
(partial model without unconserved sides chains):
PDB file :
Tito_3DEG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DEG-query.scw
PDB file :
Tito_Scwrl_3DEG.pdb
: