Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDIGIIVVSHSKNIAQGVVDLISEVAKDVSITYVGGTEDGEIGTSFDQVQQIVEQNDKKTLLAFFDLGSAKMNLELVA-DFSEKNIIINSVPVVEGAYTAAALLQAGADLDSIQSQLAELTINK
1M1K Chain:M ((66-148))
----------------------VREIDENVTLLAADDVAE-----FRVDVRDVVEEADDADYVKVLGAGQVRHELTLIADDFSE-----GAREKVEGAGGSVELTDLGEERQ-------------
General information:
TITO was launched using:
RESULT:
Template:
1M1K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35942 for 530 contacts (-67.8/contact) +
2D Compatibility (PS) -7683 + (NN) 1610 + (LL) 3636
1D Compatibility (HY) -3200 + (ID) 1000
Total energy: -42579.0 ( -80.34 by residue)
QMean score : 0.197
(partial model without unconserved sides chains):
PDB file :
Tito_1M1K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1M1K-query.scw
PDB file :
Tito_Scwrl_1M1K.pdb
: