Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLKQAFIENDSIR-LKLSASDWKEAIKLSIDPLIESGAVDAEYYDAIIESTEEFGPYYILMPGMAMPHARPEAGVKRDAFSLITLTEPVVFPDGKEVSVLLALAATSSAIHT-SVAIPQIIALFELENSIQRLTECQEAKEVLAMVEESKNSPYLEGLDLES
3BJV Chain:A ((1-156))
-MNLAQAFKENHSIRLGLTAKDWKEAVKLSVTPLIESGAVKPEYYNAIIESTESYGPYYILMPGMAMPHARPEAGVQRDAFSLVTLTEPVTFTDGKEVQVLLALAATSSKIHTSV-AIPQIIALFELDHSIERLVNCKTPEEVLAMVEESKSSPYLEG-----
General information:
TITO was launched using:
RESULT:
Template:
3BJV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109325 for 1223 contacts (-89.4/contact) +
2D Compatibility (PS) -16643 + (NN) -7559 + (LL) 752
1D Compatibility (HY) -18400 + (ID) 5650
Total energy: -156825.0 ( -128.23 by residue)
QMean score : 0.614
(partial model without unconserved sides chains):
PDB file :
Tito_3BJV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BJV-query.scw
PDB file :
Tito_Scwrl_3BJV.pdb
: