Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFIFKRKKQVEMPLEKIPAH----IGIIMDGNGRWAKKRLKPRVMGHKAGMDALQEVTIAASGLGVKVLTVYAFSTENWSRPDDEVKFIMNLPVEFFDKYVPELDKNNVRVQVIGDTHKLPKATYDAMQRACLRTKHNSGLVLNFALNYGGRSEITNAIKEIAQDVLEAKLNPDDITEDLVANHLMTNSLPYLYRDPDLIIRTSGELRLSNFLPWQSAYSEFYFTPVLWPDFKKDELHKAIVDYNQRHRRFGSV
3SGX Chain:A ((17-238))
--------------------GCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSE-----------LMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMHELAPV----DLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFAN--------
General information:
TITO was launched using:
RESULT:
Template:
3SGX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109752 for 1545 contacts (-71.0/contact) +
2D Compatibility (PS) -22644 + (NN) -11846 + (LL) 2840
1D Compatibility (HY) -16400 + (ID) 4500
Total energy: -162302.0 ( -105.05 by residue)
QMean score : 0.557
(partial model without unconserved sides chains):
PDB file :
Tito_3SGX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SGX-query.scw
PDB file :
Tito_Scwrl_3SGX.pdb
: