Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFINNYTLKIGNRILLENTNLDFEEGEINHLLGRNGSGKSQLAKDFIINRGNYFSNDIY------EDT--------LIISSYSNLPSDVTINDLERTIPWKLSKEIYQLLN--INQISKTVKL--------KQLSDGQKQKVKLLVLLSLDKHIIILDEITNALDKKSVDEINVFLQNYIQYYPEKIIINISHDINNIRSLKGNYFLIDNQKICKVDTLDDAISWYLGE
1Q12 Chain:A ((6-215))
--LQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLR-MIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENM--SFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL-GRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADR
General information:
TITO was launched using:
RESULT:
Template:
1Q12.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87290 for 1391 contacts (-62.8/contact) +
2D Compatibility (PS) -19585 + (NN) -4032 + (LL) 328
1D Compatibility (HY) -13600 + (ID) 2400
Total energy: -126579.0 ( -91.00 by residue)
QMean score : 0.367
(partial model without unconserved sides chains):
PDB file :
Tito_1Q12.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Q12-query.scw
PDB file :
Tito_Scwrl_1Q12.pdb
: