Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNTAPFIAIEGPIGAGKTTLATMLSQ-KFGFPMINEIV------------EDNPYLDKFYDNIKEWSFQLEMFFLCHRYK--------QLEDTSDHFLKKGQPVIADYHIYKNVIFAERTLSPHQLEKYKKIYHLLTDDLPKP---NFIIYIKASLPTLLHRIEKRGRPFEKKIETSYLEQLISDYEV-----AIKQLQEADPELTVLTVDGDSKDFVLNKSDFERIAAHVKELIV
4JLJ Chain:A ((44-277))
------ISIEGNIAAGKSTFVNILKQLSEDWEVVPEPVARWSNELTMEQKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESESMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVN-EDF---KDKYESLVEKVKEFL-
General information:
TITO was launched using:
RESULT:
Template:
4JLJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95241 for 1409 contacts (-67.6/contact) +
2D Compatibility (PS) -20615 + (NN) -9227 + (LL) 768
1D Compatibility (HY) -17600 + (ID) 2850
Total energy: -144765.0 ( -102.74 by residue)
QMean score : 0.523
(partial model without unconserved sides chains):
PDB file :
Tito_4JLJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JLJ-query.scw
PDB file :
Tito_Scwrl_4JLJ.pdb
: