Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIQQETRLKVADNSGAREVLTIKVLGGSGRKTANIGDVIVCTVKQATPGGVVKKGEVVKAVIVRTKSGARRSDGSYISFDENACVIIRDD-KSPRGTRIFGPVARELRENNFMKIVSLAPEVI
5GAH Chain:L ((1-123))
MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRIFGPVTRELRSEKFMKIISLAPEVL
General information:
TITO was launched using:
RESULT:
Template:
5GAH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82826 for 941 contacts (-88.0/contact) +
2D Compatibility (PS) -13464 + (NN) -6687 + (LL) 0
1D Compatibility (HY) -14400 + (ID) 3950
Total energy: -121327.0 ( -128.93 by residue)
QMean score : 0.570
(partial model without unconserved sides chains):
PDB file :
Tito_5GAH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5GAH-query.scw
PDB file :
Tito_Scwrl_5GAH.pdb
: