Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQDISLSFYKPEHLPELQSFTLTNDDKRFTSL--PKEVLSQALGIQDRYPVVILKDDLPVGFFILHASKETLASYSNNPFALLLSSLSLTAVHHGKGYAKKAMLLLPAFVSGYFPWCDEIILAVNHLNIRAKHLYMKSGFLDKGRRRIGPLGEQLILHHFL
3JVN Chain:A ((3-136))
----PVIRRAKEIDLYCLNSLMYKLHDEHHQQCPD-EKSIARYLDDPECMVYVAEMDDVIIGFITGHFC-ELISTVSKLVMMATIDELYIEKEYRREGVAEQLMMRIEQELKDY--GVKEIFVEVW--NKGA------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3JVN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97286 for 812 contacts (-119.8/contact) +
2D Compatibility (PS) -12671 + (NN) 524 + (LL) 2384
1D Compatibility (HY) -6000 + (ID) 1200
Total energy: -114249.0 ( -140.70 by residue)
QMean score : 0.380
(partial model without unconserved sides chains):
PDB file :
Tito_3JVN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JVN-query.scw
PDB file :
Tito_Scwrl_3JVN.pdb
: