Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
METNKPTLYWSLLMFKDWNFYIASTLKGLVFV---GSQNKPIEELFEWARKRFPGSLLVEDDDKLEPYAVEITQYLEGKRKN--FTVPVEYAG-TQFQLAVWNALCE-IPYGQTKSYSDIANDINKPAAVRAVGAAIGANPVLITVPCHRVIGKNGSLTGYRGGFEMKTLLLDLEKRASSEMDVPH
1MGT Chain:A ((21-167))
----------------------SGRVQGIAFAFDRGTLMKRIHDLAEHLGKR---GVSISLDVQPSDYPEKVFKVLIGELDNASFLRELSFEGVTPFEKKVYEWLTKNVKRGSVITYGDLAKALN--TSPRAVGGAMKRNPYPIVVPCHRVVAHDG-IGYYSSGIEEKKFLLEIE-----------
General information:
TITO was launched using:
RESULT:
Template:
1MGT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77850 for 981 contacts (-79.4/contact) +
2D Compatibility (PS) -15102 + (NN) -5671 + (LL) 2140
1D Compatibility (HY) -9200 + (ID) 2350
Total energy: -108033.0 ( -110.13 by residue)
QMean score : 0.523
(partial model without unconserved sides chains):
PDB file :
Tito_1MGT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MGT-query.scw
PDB file :
Tito_Scwrl_1MGT.pdb
: